imagej manual tracker plugin Search Results


imagej s intensity correlation analysis plugin  (Oxford Instruments)
99
Oxford Instruments imagej s intensity correlation analysis plugin
Imagej S Intensity Correlation Analysis Plugin, supplied by Oxford Instruments, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/imagej s intensity correlation analysis plugin/product/Oxford Instruments
Average 99 stars, based on 1 article reviews
imagej s intensity correlation analysis plugin - by Bioz Stars, 2026-03
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bio formats plugin for imagej  (Glencoe Software Inc)
93
Glencoe Software Inc bio formats plugin for imagej
Bio Formats Plugin For Imagej, supplied by Glencoe Software Inc, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/bio formats plugin for imagej/product/Glencoe Software Inc
Average 93 stars, based on 1 article reviews
bio formats plugin for imagej - by Bioz Stars, 2026-03
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particle image velocimetry (piv) plugin in imagej  (MathWorks Inc)
90
MathWorks Inc particle image velocimetry (piv) plugin in imagej
Particle Image Velocimetry (Piv) Plugin In Imagej, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/particle image velocimetry (piv) plugin in imagej/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
particle image velocimetry (piv) plugin in imagej - by Bioz Stars, 2026-03
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manual vesicle tracking  (Institut Curie)
90
Institut Curie manual vesicle tracking
Manual Vesicle Tracking, supplied by Institut Curie, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/manual vesicle tracking/product/Institut Curie
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manual vesicle tracking - by Bioz Stars, 2026-03
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fiji integrated plugin imagej 3d viewer  (Schmid GmbH)
90
Schmid GmbH fiji integrated plugin imagej 3d viewer
Fiji Integrated Plugin Imagej 3d Viewer, supplied by Schmid GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/fiji integrated plugin imagej 3d viewer/product/Schmid GmbH
Average 90 stars, based on 1 article reviews
fiji integrated plugin imagej 3d viewer - by Bioz Stars, 2026-03
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iterative deconvolve 3d imagej plugin  (Optinav Inc)
90
Optinav Inc iterative deconvolve 3d imagej plugin
Iterative Deconvolve 3d Imagej Plugin, supplied by Optinav Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/iterative deconvolve 3d imagej plugin/product/Optinav Inc
Average 90 stars, based on 1 article reviews
iterative deconvolve 3d imagej plugin - by Bioz Stars, 2026-03
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imagej particle tracking plugin  (ibidi GmbH)
90
ibidi GmbH imagej particle tracking plugin
Imagej Particle Tracking Plugin, supplied by ibidi GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/imagej particle tracking plugin/product/ibidi GmbH
Average 90 stars, based on 1 article reviews
imagej particle tracking plugin - by Bioz Stars, 2026-03
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imagej plugin ihc profiler  (SourceForge net)
90
SourceForge net imagej plugin ihc profiler
AML infiltration induces proliferation of bone marrow MSPCs. (A) Exemplary procedure for quantification of CD271. First, tile images were fused into larger images (1). Second, a color deconvolution was performed <t>(ImageJ,</t> <t>IHC</t> Profiler <t>plugin)</t> to obtain separate hematoxylin and DAB images. The hematoxylin image was thresholded to obtain a mask of the total bone region (2). The DAB image (3) was inverted and thresholded to obtain a mask of the positive DAB regions (4). Scale bars, 1 mm. (B) Representative images of bone marrow biopsy samples of non-leukemic donors (controls) and AML patients stained for CD271+ MSPCs (brown) and counterstained with hematoxylin (blue). Scale bars, 400 µm. (C) Quantification of CD271+ bone marrow MSPCs in controls (n = 58) and AML patients (n = 36); CD271+ area is calculated by CD271+ stained area divided by total tissue surface. (D) Left: representative image from bone marrow after silver staining representing reticular fibers. Right: image converted by trainable Weka segmentation showing 3 different classes: red, reticular fiber; green, tissue; purple, background. Scale bars, 50 µm. (E) Representative images of bone marrow biopsy samples from controls and AML patients stained for reticular fibers with silver staining (black fiber) and counterstained with the fast-red nuclear solution. Scale bars, 100 µm. (F) Quantification of reticular fibers in control (n = 19) and AML (n = 37) bone marrow by calculating positive silver stained area divided by total tissue surface (n = 56). Data are shown as mean ± standard error of the mean (SEM). *P < .05; **P < .01 (determined by Mann-Whitney U test).
Imagej Plugin Ihc Profiler, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/imagej plugin ihc profiler/product/SourceForge net
Average 90 stars, based on 1 article reviews
imagej plugin ihc profiler - by Bioz Stars, 2026-03
90/100 stars
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cellranger v3.1  (10X Genomics)
90
10X Genomics cellranger v3.1
AML infiltration induces proliferation of bone marrow MSPCs. (A) Exemplary procedure for quantification of CD271. First, tile images were fused into larger images (1). Second, a color deconvolution was performed <t>(ImageJ,</t> <t>IHC</t> Profiler <t>plugin)</t> to obtain separate hematoxylin and DAB images. The hematoxylin image was thresholded to obtain a mask of the total bone region (2). The DAB image (3) was inverted and thresholded to obtain a mask of the positive DAB regions (4). Scale bars, 1 mm. (B) Representative images of bone marrow biopsy samples of non-leukemic donors (controls) and AML patients stained for CD271+ MSPCs (brown) and counterstained with hematoxylin (blue). Scale bars, 400 µm. (C) Quantification of CD271+ bone marrow MSPCs in controls (n = 58) and AML patients (n = 36); CD271+ area is calculated by CD271+ stained area divided by total tissue surface. (D) Left: representative image from bone marrow after silver staining representing reticular fibers. Right: image converted by trainable Weka segmentation showing 3 different classes: red, reticular fiber; green, tissue; purple, background. Scale bars, 50 µm. (E) Representative images of bone marrow biopsy samples from controls and AML patients stained for reticular fibers with silver staining (black fiber) and counterstained with the fast-red nuclear solution. Scale bars, 100 µm. (F) Quantification of reticular fibers in control (n = 19) and AML (n = 37) bone marrow by calculating positive silver stained area divided by total tissue surface (n = 56). Data are shown as mean ± standard error of the mean (SEM). *P < .05; **P < .01 (determined by Mann-Whitney U test).
Cellranger V3.1, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/cellranger v3.1/product/10X Genomics
Average 90 stars, based on 1 article reviews
cellranger v3.1 - by Bioz Stars, 2026-03
90/100 stars
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imagej's multistackregistration plugin  (KNIME GmbH)
90
KNIME GmbH imagej's multistackregistration plugin
AML infiltration induces proliferation of bone marrow MSPCs. (A) Exemplary procedure for quantification of CD271. First, tile images were fused into larger images (1). Second, a color deconvolution was performed <t>(ImageJ,</t> <t>IHC</t> Profiler <t>plugin)</t> to obtain separate hematoxylin and DAB images. The hematoxylin image was thresholded to obtain a mask of the total bone region (2). The DAB image (3) was inverted and thresholded to obtain a mask of the positive DAB regions (4). Scale bars, 1 mm. (B) Representative images of bone marrow biopsy samples of non-leukemic donors (controls) and AML patients stained for CD271+ MSPCs (brown) and counterstained with hematoxylin (blue). Scale bars, 400 µm. (C) Quantification of CD271+ bone marrow MSPCs in controls (n = 58) and AML patients (n = 36); CD271+ area is calculated by CD271+ stained area divided by total tissue surface. (D) Left: representative image from bone marrow after silver staining representing reticular fibers. Right: image converted by trainable Weka segmentation showing 3 different classes: red, reticular fiber; green, tissue; purple, background. Scale bars, 50 µm. (E) Representative images of bone marrow biopsy samples from controls and AML patients stained for reticular fibers with silver staining (black fiber) and counterstained with the fast-red nuclear solution. Scale bars, 100 µm. (F) Quantification of reticular fibers in control (n = 19) and AML (n = 37) bone marrow by calculating positive silver stained area divided by total tissue surface (n = 56). Data are shown as mean ± standard error of the mean (SEM). *P < .05; **P < .01 (determined by Mann-Whitney U test).
Imagej's Multistackregistration Plugin, supplied by KNIME GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/imagej's multistackregistration plugin/product/KNIME GmbH
Average 90 stars, based on 1 article reviews
imagej's multistackregistration plugin - by Bioz Stars, 2026-03
90/100 stars
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imagej plugin 3-d viewer  (Schmid GmbH)
90
Schmid GmbH imagej plugin 3-d viewer
AML infiltration induces proliferation of bone marrow MSPCs. (A) Exemplary procedure for quantification of CD271. First, tile images were fused into larger images (1). Second, a color deconvolution was performed <t>(ImageJ,</t> <t>IHC</t> Profiler <t>plugin)</t> to obtain separate hematoxylin and DAB images. The hematoxylin image was thresholded to obtain a mask of the total bone region (2). The DAB image (3) was inverted and thresholded to obtain a mask of the positive DAB regions (4). Scale bars, 1 mm. (B) Representative images of bone marrow biopsy samples of non-leukemic donors (controls) and AML patients stained for CD271+ MSPCs (brown) and counterstained with hematoxylin (blue). Scale bars, 400 µm. (C) Quantification of CD271+ bone marrow MSPCs in controls (n = 58) and AML patients (n = 36); CD271+ area is calculated by CD271+ stained area divided by total tissue surface. (D) Left: representative image from bone marrow after silver staining representing reticular fibers. Right: image converted by trainable Weka segmentation showing 3 different classes: red, reticular fiber; green, tissue; purple, background. Scale bars, 50 µm. (E) Representative images of bone marrow biopsy samples from controls and AML patients stained for reticular fibers with silver staining (black fiber) and counterstained with the fast-red nuclear solution. Scale bars, 100 µm. (F) Quantification of reticular fibers in control (n = 19) and AML (n = 37) bone marrow by calculating positive silver stained area divided by total tissue surface (n = 56). Data are shown as mean ± standard error of the mean (SEM). *P < .05; **P < .01 (determined by Mann-Whitney U test).
Imagej Plugin 3 D Viewer, supplied by Schmid GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/imagej plugin 3-d viewer/product/Schmid GmbH
Average 90 stars, based on 1 article reviews
imagej plugin 3-d viewer - by Bioz Stars, 2026-03
90/100 stars
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imagej plugin software actogramj  (Schmid GmbH)
90
Schmid GmbH imagej plugin software actogramj
AML infiltration induces proliferation of bone marrow MSPCs. (A) Exemplary procedure for quantification of CD271. First, tile images were fused into larger images (1). Second, a color deconvolution was performed <t>(ImageJ,</t> <t>IHC</t> Profiler <t>plugin)</t> to obtain separate hematoxylin and DAB images. The hematoxylin image was thresholded to obtain a mask of the total bone region (2). The DAB image (3) was inverted and thresholded to obtain a mask of the positive DAB regions (4). Scale bars, 1 mm. (B) Representative images of bone marrow biopsy samples of non-leukemic donors (controls) and AML patients stained for CD271+ MSPCs (brown) and counterstained with hematoxylin (blue). Scale bars, 400 µm. (C) Quantification of CD271+ bone marrow MSPCs in controls (n = 58) and AML patients (n = 36); CD271+ area is calculated by CD271+ stained area divided by total tissue surface. (D) Left: representative image from bone marrow after silver staining representing reticular fibers. Right: image converted by trainable Weka segmentation showing 3 different classes: red, reticular fiber; green, tissue; purple, background. Scale bars, 50 µm. (E) Representative images of bone marrow biopsy samples from controls and AML patients stained for reticular fibers with silver staining (black fiber) and counterstained with the fast-red nuclear solution. Scale bars, 100 µm. (F) Quantification of reticular fibers in control (n = 19) and AML (n = 37) bone marrow by calculating positive silver stained area divided by total tissue surface (n = 56). Data are shown as mean ± standard error of the mean (SEM). *P < .05; **P < .01 (determined by Mann-Whitney U test).
Imagej Plugin Software Actogramj, supplied by Schmid GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/imagej plugin software actogramj/product/Schmid GmbH
Average 90 stars, based on 1 article reviews
imagej plugin software actogramj - by Bioz Stars, 2026-03
90/100 stars
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Image Search Results


AML infiltration induces proliferation of bone marrow MSPCs. (A) Exemplary procedure for quantification of CD271. First, tile images were fused into larger images (1). Second, a color deconvolution was performed (ImageJ, IHC Profiler plugin) to obtain separate hematoxylin and DAB images. The hematoxylin image was thresholded to obtain a mask of the total bone region (2). The DAB image (3) was inverted and thresholded to obtain a mask of the positive DAB regions (4). Scale bars, 1 mm. (B) Representative images of bone marrow biopsy samples of non-leukemic donors (controls) and AML patients stained for CD271+ MSPCs (brown) and counterstained with hematoxylin (blue). Scale bars, 400 µm. (C) Quantification of CD271+ bone marrow MSPCs in controls (n = 58) and AML patients (n = 36); CD271+ area is calculated by CD271+ stained area divided by total tissue surface. (D) Left: representative image from bone marrow after silver staining representing reticular fibers. Right: image converted by trainable Weka segmentation showing 3 different classes: red, reticular fiber; green, tissue; purple, background. Scale bars, 50 µm. (E) Representative images of bone marrow biopsy samples from controls and AML patients stained for reticular fibers with silver staining (black fiber) and counterstained with the fast-red nuclear solution. Scale bars, 100 µm. (F) Quantification of reticular fibers in control (n = 19) and AML (n = 37) bone marrow by calculating positive silver stained area divided by total tissue surface (n = 56). Data are shown as mean ± standard error of the mean (SEM). *P < .05; **P < .01 (determined by Mann-Whitney U test).

Journal: Blood Advances

Article Title: Acute myeloid leukemia–induced remodeling of the human bone marrow niche predicts clinical outcome

doi: 10.1182/bloodadvances.2020001808

Figure Lengend Snippet: AML infiltration induces proliferation of bone marrow MSPCs. (A) Exemplary procedure for quantification of CD271. First, tile images were fused into larger images (1). Second, a color deconvolution was performed (ImageJ, IHC Profiler plugin) to obtain separate hematoxylin and DAB images. The hematoxylin image was thresholded to obtain a mask of the total bone region (2). The DAB image (3) was inverted and thresholded to obtain a mask of the positive DAB regions (4). Scale bars, 1 mm. (B) Representative images of bone marrow biopsy samples of non-leukemic donors (controls) and AML patients stained for CD271+ MSPCs (brown) and counterstained with hematoxylin (blue). Scale bars, 400 µm. (C) Quantification of CD271+ bone marrow MSPCs in controls (n = 58) and AML patients (n = 36); CD271+ area is calculated by CD271+ stained area divided by total tissue surface. (D) Left: representative image from bone marrow after silver staining representing reticular fibers. Right: image converted by trainable Weka segmentation showing 3 different classes: red, reticular fiber; green, tissue; purple, background. Scale bars, 50 µm. (E) Representative images of bone marrow biopsy samples from controls and AML patients stained for reticular fibers with silver staining (black fiber) and counterstained with the fast-red nuclear solution. Scale bars, 100 µm. (F) Quantification of reticular fibers in control (n = 19) and AML (n = 37) bone marrow by calculating positive silver stained area divided by total tissue surface (n = 56). Data are shown as mean ± standard error of the mean (SEM). *P < .05; **P < .01 (determined by Mann-Whitney U test).

Article Snippet: Color deconvolution of the images was performed to obtain separate hematoxylin and DAB images using the ImageJ plugin IHC Profiler ( https://sourceforge.net/projects/ihcprofiler/ ).

Techniques: Staining, Silver Staining, Control, MANN-WHITNEY